dataBrowser: Browse the current data available in TFregulomeR

In benoukraflab/TFregulomeR: TFregulomeR reveals transcription factors’ context-specific features and functions

Browse the current data available in TFregulomeR

Description

This function allows you to get the current data in TFregulomeR

Usage

dataBrowser(
  species,
  organ,
  sample_type,
  cell_tissue_name,
  tf,
  disease_state,
  source,
  server = "ca",
  TFregulome_url,
  local_db_path = NULL
)

Arguments

species	The species of interest
organ	The organ of interest
sample_type	The sample type of interest
cell_tissue_name	The name of tissue or cell of interest
tf	The TF of interest
disease_state	The disease state of interest
source	The source of interest
server	server location to be linked, either 'sg' or 'ca'.
TFregulome_url	TFregulomeR server is implemented in MethMotif server. If the MethMotif url is NO more "https://bioinfo-csi.nus.edu.sg/methmotif/" or "https://methmotif.org", please use a new url.
local_db_path	The complete path to the SQLite implementation of TFregulomeR database available at "https://methmotif.org/API_ZIPPED.zip"

Value

data.frame containing the information of the queried TFBSs in TFregulomeR

Examples

TFBS_brain <- dataBrowser(organ = "brain")

benoukraflab/TFregulomeR documentation built on April 17, 2024, 7:57 p.m.