dataBrowser: Browse the current data available in TFregulomeR

View source: R/dataBrowser.R

dataBrowserR Documentation

Browse the current data available in TFregulomeR

Description

This function allows you to get the current data in TFregulomeR

Usage

dataBrowser(
  species,
  organ,
  sample_type,
  cell_tissue_name,
  tf,
  disease_state,
  source,
  server = "ca",
  TFregulome_url,
  local_db_path = NULL
)

Arguments

species

The species of interest

organ

The organ of interest

sample_type

The sample type of interest

cell_tissue_name

The name of tissue or cell of interest

tf

The TF of interest

disease_state

The disease state of interest

source

The source of interest

server

server location to be linked, either 'sg' or 'ca'.

TFregulome_url

TFregulomeR server is implemented in MethMotif server. If the MethMotif url is NO more "https://bioinfo-csi.nus.edu.sg/methmotif/" or "https://methmotif.org", please use a new url.

local_db_path

The complete path to the SQLite implementation of TFregulomeR database available at "https://methmotif.org/API_ZIPPED.zip"

Value

data.frame containing the information of the queried TFBSs in TFregulomeR

Examples

TFBS_brain <- dataBrowser(organ = "brain")

benoukraflab/TFregulomeR documentation built on July 8, 2024, 5:03 p.m.