Files in benoukraflab/TFregulomeR
TFregulomeR reveals transcription factors’ context-specific features and functions

.gitignore
CITATION.cff
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/MethMotif.R R/apiClass.R R/cofactorReport.R R/commonPeakResult.R R/commonPeaks.R R/dataBrowser.R R/exclusivePeakResult.R R/exclusivePeaks.R R/exportMMPFM.R R/genomeAnnotate.R R/greatAnnotate.R R/interactome3D.R R/intersectPeakMatrix.R R/intersectPeakMatrixResult.R R/loadPeaks.R R/motifDistrib.R R/plotDistrib.R R/plotLogo.R R/readBetaScoreMatrix.R R/readMMmotif.R R/searchMotif.R R/server_utils.R R/toTFBSTools.R README.md
inst/TFregulomeR_logo.png
inst/case_study/case_study_of_ATF3.R inst/case_study/case_study_of_CEBPB.R inst/case_study/case_study_of_MAFF.R
inst/extdata/HCT116_CEBPb_binding_sites.txt
inst/extdata/MM1_HSA_K562_CEBPB_common_peaks-logo-entropy.png
inst/extdata/MM1_HSA_K562_CEBPB_exclusive_peaks-logo-entropy.png
inst/extdata/MM1_HSA_K562_CEBPB_overlapped_with_MM1_HSA_K562_ATF4-logo-entropy.png
inst/extdata/MM1_HSA_K562_CEBPB_overlapped_with_MM1_HSA_K562_CEBPD-logo-entropy.png
inst/extdata/cofactor_report.png
inst/extdata/commonPeaks_tutorial.png
inst/extdata/exclusivePeaks_tutorial.png
inst/extdata/genomeAnnotate.png
inst/extdata/greatAnnotate.png
inst/extdata/intersectPeakMatrix_tutorial.png
inst/extdata/motif_consistency.png
inst/extdata/motif_distribution.png
inst/extdata/plotLogo.png
inst/unitTests/test_APIconnection.R inst/update_notes/compendium_update.md inst/update_notes/functionality_update.md man/cofactorReport.Rd man/commonPeakResult.Rd man/commonPeaks.Rd man/dataBrowser.Rd man/dot-construct_api.Rd man/dot-loadPeaks.Rd man/dot-searchMotif.Rd man/exclusivePeakResult.Rd man/exclusivePeaks.Rd man/exportMMPFM.Rd man/genomeAnnotate.Rd man/greatAnnotate.Rd man/interactome3D.Rd man/intersectPeakMatrix.Rd man/intersectPeakMatrixResult.Rd man/loadPeaks.Rd man/motifDistrib.Rd man/output_message.Rd man/plotDistrib.Rd man/plotLogo.Rd man/searchMotif.Rd man/toTFBSTools.Rd tests/runTests.R vignettes/TFregulomeR.Rmd
benoukraflab/TFregulomeR documentation built on July 8, 2024, 5:03 p.m.