Files in benoukraflab/TFregulomeR
TFregulomeR reveals transcription factors’ context-specific features and functions
.gitignore
CITATION.cff
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/MethMotif.R
R/apiClass.R
R/cofactorReport.R
R/commonPeakResult.R
R/commonPeaks.R
R/dataBrowser.R
R/exclusivePeakResult.R
R/exclusivePeaks.R
R/exportMMPFM.R
R/genomeAnnotate.R
R/greatAnnotate.R
R/interactome3D.R
R/intersectPeakMatrix.R
R/intersectPeakMatrixResult.R
R/loadPeaks.R
R/motifDistrib.R
R/plotDistrib.R
R/plotLogo.R
R/readBetaScoreMatrix.R
R/readMMmotif.R
R/searchMotif.R
R/server_utils.R
R/toTFBSTools.R
README.md
inst/TFregulomeR_logo.png
inst/case_study/case_study_of_ATF3.R
inst/case_study/case_study_of_CEBPB.R
inst/case_study/case_study_of_MAFF.R
inst/extdata/HCT116_CEBPb_binding_sites.txt
inst/extdata/MM1_HSA_K562_CEBPB_common_peaks-logo-entropy.png
inst/extdata/MM1_HSA_K562_CEBPB_exclusive_peaks-logo-entropy.png
inst/extdata/MM1_HSA_K562_CEBPB_overlapped_with_MM1_HSA_K562_ATF4-logo-entropy.png
inst/extdata/MM1_HSA_K562_CEBPB_overlapped_with_MM1_HSA_K562_CEBPD-logo-entropy.png
inst/extdata/cofactor_report.png
inst/extdata/commonPeaks_tutorial.png
inst/extdata/exclusivePeaks_tutorial.png
inst/extdata/genomeAnnotate.png
inst/extdata/greatAnnotate.png
inst/extdata/intersectPeakMatrix_tutorial.png
inst/extdata/motif_consistency.png
inst/extdata/motif_distribution.png
inst/extdata/plotLogo.png
inst/unitTests/test_APIconnection.R
inst/update_notes/compendium_update.md
inst/update_notes/functionality_update.md
man/cofactorReport.Rd
man/commonPeakResult.Rd
man/commonPeaks.Rd
man/dataBrowser.Rd
man/dot-construct_api.Rd
man/dot-loadPeaks.Rd
man/dot-searchMotif.Rd
man/exclusivePeakResult.Rd
man/exclusivePeaks.Rd
man/exportMMPFM.Rd
man/genomeAnnotate.Rd
man/greatAnnotate.Rd
man/interactome3D.Rd
man/intersectPeakMatrix.Rd
man/intersectPeakMatrixResult.Rd
man/loadPeaks.Rd
man/motifDistrib.Rd
man/output_message.Rd
man/plotDistrib.Rd
man/plotLogo.Rd
man/searchMotif.Rd
man/toTFBSTools.Rd
tests/runTests.R
vignettes/TFregulomeR.Rmd
