Man pages for benoukraflab/TFregulomeR
TFregulomeR reveals transcription factors’ context-specific features and functions
| cofactorReport | cofactorReport |
| commonPeakResult | commonPeaks result |
| commonPeaks | commonPeaks |
| dataBrowser | Browse the current data available in TFregulomeR |
| dot-construct_api | Standardized api object constructor |
| dot-loadPeaks | load peaks from TFregulomeR |
| dot-searchMotif | Search motif PFM and beta score matrix (if source is... |
| exclusivePeakResult | exclusivePeaks result |
| exclusivePeaks | exclusivePeaks |
| exportMMPFM | export motif position frequency matrix and beta score matrix |
| genomeAnnotate | genomeAnnotate |
| greatAnnotate | greatAnnotate |
| interactome3D | interactome3D |
| intersectPeakMatrix | intersectPeakMatrix |
| intersectPeakMatrixResult | intersectPeakMatrix result |
| loadPeaks | load peaks from TFregulomeR |
| motifDistrib | profile TFBS distribution |
| output_message | A structured format for printing to the console |
| plotDistrib | plot TFBS distribution from motifDistrib() output |
| plotLogo | plot (Meth)Motif logo |
| searchMotif | Search motif PFM and beta score matrix (if source is... |
| toTFBSTools | convert motif PFM in TFregulomeR into PFMatrix class object... |
