Files in bentaylor1/spatsurv
Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/BsplineHaz.R
R/GMRF.R
R/PsplineHaz.R
R/RWprior.R
R/baseHazST.R
R/baseHazST_prior.R
R/basehazardspec.R
R/calibratemcmc.R
R/circulant.R
R/covarianceFunctions.R
R/exponential.R
R/gompertz.R
R/log_posteriors_and_derivatives.R
R/log_posteriors_and_derivatives_SPDE.R
R/log_posteriors_and_derivatives_gridded.R
R/log_posteriors_and_derivatives_polygonal.R
R/makeham.R
R/maplayers.R
R/mcmcIterator.R
R/mcmcPriors.R
R/mcmcProgress.R
R/nonspatial_log_likelihood_and_derivatives.R
R/optifix.R
R/outputSummary.R
R/partial_likelihood.R
R/plottingfunctions.R
R/postprocessing.R
R/spatgrid.R
R/spatial_imputation.R
R/spatsurv.R
R/spatsurvMisc.R
R/splineFunctions.R
R/surv3d.R
R/survsim.R
R/survspat.R
R/survspatNS.R
R/tpow.R
R/txtProgressBar2.R
R/weibull.R
R/zzz.R
README.md
data/fs.rda
data/fstimes.rda
inst/CITATION
man/B.Rd
man/Bspline.construct.Rd
man/BsplineHaz.Rd
man/CSplot.Rd
man/Et_PP.Rd
man/EvalCov.Rd
man/ExponentialCovFct.Rd
man/FFTgrid.Rd
man/GammaFromY_SPDE.Rd
man/GammafromY.Rd
man/Independent.Rd
man/MCE.Rd
man/NonSpatialLogLikelihood_or_gradient.Rd
man/PsplineHaz.Rd
man/QuadApprox.Rd
man/SPDE.Rd
man/SPDEprec.Rd
man/SpikedExponentialCovFct.Rd
man/Summarise.Rd
man/YFromGamma_SPDE.Rd
man/YfromGamma.Rd
man/allocate.Rd
man/alpha.Rd
man/baseHazST.Rd
man/basehazard.Rd
man/basehazard.basehazardspec.Rd
man/baselinehazard.Rd
man/betapriorGauss.Rd
man/boxplotRisk.Rd
man/checkSurvivalData.Rd
man/circulant.Rd
man/circulant.matrix.Rd
man/circulant.numeric.Rd
man/circulantij.Rd
man/covmodel.Rd
man/cumbasehazard.Rd
man/cumbasehazard.basehazardspec.Rd
man/cumulativeBspline.construct.Rd
man/density_PP.Rd
man/densityquantile.Rd
man/densityquantile.basehazardspec.Rd
man/densityquantile_PP.Rd
man/derivindepGaussianprior.Rd
man/derivindepGaussianpriorST.Rd
man/derivpsplineprior.Rd
man/distinfo.Rd
man/distinfo.basehazardspec.Rd
man/estimateY.Rd
man/etapriorGauss.Rd
man/exponentialHaz.Rd
man/fixedpars.Rd
man/fixmatrix.Rd
man/frailtylag1.Rd
man/fs.Rd
man/fstimes.Rd
man/gamma2risk.Rd
man/gencens.Rd
man/getBackground.Rd
man/getBbasis.Rd
man/getGrid.Rd
man/getOptCellwidth.Rd
man/getbb.Rd
man/getcov.Rd
man/getgrd.Rd
man/getleneta.Rd
man/getparranges.Rd
man/getsurvdata.Rd
man/gompertzHaz.Rd
man/gradbasehazard.Rd
man/gradbasehazard.basehazardspec.Rd
man/gradcumbasehazard.Rd
man/gradcumbasehazard.basehazardspec.Rd
man/grid2spdf.Rd
man/grid2spix.Rd
man/grid2spts.Rd
man/gridY.Rd
man/gridY_polygonal.Rd
man/guess_t.Rd
man/hasNext.Rd
man/hasNext.iter.Rd
man/hazard_PP.Rd
man/hazardexceedance.Rd
man/hazardpars.Rd
man/hessbasehazard.Rd
man/hessbasehazard.basehazardspec.Rd
man/hesscumbasehazard.Rd
man/hesscumbasehazard.basehazardspec.Rd
man/imputationModel.Rd
man/indepGaussianprior.Rd
man/indepGaussianpriorST.Rd
man/inference.control.Rd
man/invtransformweibull.Rd
man/is.burnin.Rd
man/is.retain.Rd
man/iteration.Rd
man/logPosterior.Rd
man/logPosterior_SPDE.Rd
man/logPosterior_gridded.Rd
man/logPosterior_polygonal.Rd
man/loop.mcmc.Rd
man/makehamHaz.Rd
man/maxlikparamPHsurv.Rd
man/mcmcLoop.Rd
man/mcmcPriors.Rd
man/mcmcProgressNone.Rd
man/mcmcProgressPrint.Rd
man/mcmcProgressTextBar.Rd
man/mcmcpars.Rd
man/midpts.Rd
man/neighLocs.Rd
man/neighOrder.Rd
man/nextStep.Rd
man/omegapriorGauss.Rd
man/omegapriorGaussST.Rd
man/optifix.Rd
man/plotsurv.Rd
man/polyadd.Rd
man/polymult.Rd
man/posteriorcov.Rd
man/predict.mcmcspatsurv.Rd
man/print.mcmc.Rd
man/print.mcmcspatsurv.Rd
man/print.mlspatsurv.Rd
man/print.textSummary.Rd
man/priorposterior.Rd
man/proposalVariance.Rd
man/proposalVariance_SPDE.Rd
man/proposalVariance_gridded.Rd
man/proposalVariance_polygonal.Rd
man/psplineRWprior.Rd
man/psplineprior.Rd
man/quantile.mcmcspatsurv.Rd
man/quantile.mlspatsurv.Rd
man/randompars.Rd
man/reconstruct.bs.Rd
man/reconstruct.bs.coxph.Rd
man/reconstruct.bs.mcmcspatsurv.Rd
man/resetLoop.Rd
man/residuals.mcmcspatsurv.Rd
man/setTxtProgressBar2.Rd
man/setupHazard.Rd
man/setupPrecMatStruct.Rd
man/showGrid.Rd
man/simsurv.Rd
man/spatialpars.Rd
man/spatsurv-package.Rd
man/spatsurvVignette.Rd
man/spplot1.Rd
man/spplot_compare.Rd
man/summary.mcmc.Rd
man/summary.mcmcspatsurv.Rd
man/surv3d.Rd
man/survival_PP.Rd
man/survspat.Rd
man/survspatNS.Rd
man/textSummary.Rd
man/timevaryingPL.Rd
man/tpowHaz.Rd
man/transformweibull.Rd
man/txtProgressBar2.Rd
man/urlTemplate.Rd
man/vcov.mcmcspatsurv.Rd
man/vcov.mlspatsurv.Rd
man/weibullHaz.Rd
tests/iteratorTest.R
tests/test_QuadApprox.R
tests/test_sim_ana.R
tests/test_survspat.R
