explore_transformations: Explore transformations

In bhagwataditya/autonomics: Unified statistal Modeling of Omics Data

Explore transformations

Description

Explore transformations

Usage

explore_transformations(
  object,
  subgroupvar = "subgroup",
  transformations = c("quantnorm", "vsn", "zscore", "invnorm"),
  method = "pca",
  xdim = 1,
  ydim = 2,
  ...
)

Arguments

object	SummarizedExperiment
subgroupvar	string
transformations	vector
method	'pca', 'pls', 'sma', or 'lda'
xdim	number (default 1)
ydim	number (default 2)
...	passed to plot_data

Value

grid object

Examples

file <- system.file('extdata/billing19.proteingroups.txt', package = 'autonomics')
subgroups <- sprintf('%s_STD', c('E00','E01','E02','E05','E15','E30','M00'))
object <- read_maxquant_proteingroups(file, subgroups = subgroups)
explore_transformations(object, transformations = c('quantnorm', 'zscore', 'invnorm'))

bhagwataditya/autonomics documentation built on May 18, 2024, 11:48 a.m.