fcor: Feature correlations/distances

In bhagwataditya/autonomics: Unified Statistical Modeling of Omics Data

Feature correlations/distances

Description

Feature correlations/distances

Usage

mdsplot(distmat, title = NULL)

fcor(object, verbose = TRUE)

scor(object, verbose = TRUE)

fdist(object, method = "cor")

sdist(object, method = "cor")

Arguments

distmat	distance matrix
title	NULL or string
object	SummarizedExperiment
verbose	TRUE or FALSE
method	'cor', 'euclidian', etc

Value

matrix

Examples

# Correlations
    object <- twofactor_sumexp()
    scor(object)               %>%  pheatmap::pheatmap()
    fcor(object)               %>%  pheatmap::pheatmap()
# Distances
    sdist(object, 'cor')       %>% mdsplot('samples: cor')
    sdist(object, 'euclidian') %>% mdsplot('samples: euclidian')
    fdist(object, 'cor')       %>% mdsplot('features: cor')
    fdist(object, 'euclidian') %>% mdsplot('features: euclidian')

bhagwataditya/autonomics documentation built on Dec. 1, 2024, 12:27 a.m.