mdsplot | R Documentation |
Feature correlations/distances
mdsplot(distmat, title = NULL)
fcor(object, verbose = TRUE)
scor(object, verbose = TRUE)
fdist(object, method = "cor")
sdist(object, method = "cor")
distmat |
distance matrix |
title |
NULL or string |
object |
SummarizedExperiment |
verbose |
TRUE or FALSE |
method |
'cor', 'euclidian', etc |
matrix
# Correlations
object <- twofactor_sumexp()
scor(object) %>% pheatmap::pheatmap()
fcor(object) %>% pheatmap::pheatmap()
# Distances
sdist(object, 'cor') %>% mdsplot('samples: cor')
sdist(object, 'euclidian') %>% mdsplot('samples: euclidian')
fdist(object, 'cor') %>% mdsplot('features: cor')
fdist(object, 'euclidian') %>% mdsplot('features: euclidian')
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