fdata: Get/Set sample/feature data

In bhagwataditya/autonomics: Unified Statistical Modeling of Omics Data

Get/Set sample/feature data

Description

Get/Set sample/feature data

Usage

fdata(object)

sdata(object)

fdt(object)

sdt(object)

## S4 method for signature 'SummarizedExperiment'
fdata(object)

## S4 method for signature 'SummarizedExperiment'
sdata(object)

## S4 method for signature 'SummarizedExperiment'
fdt(object)

## S4 method for signature 'SummarizedExperiment'
sdt(object)

fdata(object) <- value

sdata(object) <- value

fdt(object) <- value

sdt(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,data.frame'
fdata(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,data.frame'
sdata(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,DataFrame'
sdata(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,data.table'
fdt(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,data.table'
sdt(object) <- value

Arguments

object	SummarizedExperiment
value	data.frame/data.table

Value

data.frame/data.table (get) or updated object (set)

Examples

# Read data
    file <- system.file('extdata/billing19.proteingroups.txt', package = 'autonomics')
    object <- read_maxquant_proteingroups(file)
# sdt/fdt
    sdt(object)[1:3, ]
    fdt(object)[1:3, ]
    sdt(object) %<>% cbind(b=1)
    fdt(object) %<>% cbind(b=1)
    sdt(object)
    fdt(object)
# sdata/fdata
    sdata(object)[1:3, ]
    fdata(object)[1:3, ]
    sdata(object) %<>% cbind(a=1)
    fdata(object) %<>% cbind(a=1)
    sdata(object)[1:3, ]
    fdata(object)[1:3, ]

bhagwataditya/autonomics documentation built on Dec. 1, 2024, 12:27 a.m.