ftype: Feature type

In bhagwataditya/autonomics: Unified Statistical Modeling of Omics Data

Feature type

Description

Feature type

Usage

ftype(
  object,
  formula = default_formula(object),
  drop = varlevels_dont_clash(object, all.vars(formula)),
  fit = fits(object)[1],
  codingfun = contr.treatment.explicit
)

Arguments

object	SummarizedExperiment
formula	model formula
drop	TRUE or FALSE
fit	'limma', 'lm', 'lme', 'wilcoxon'
codingfun	coding function

Value

SummarizedExperiment

Examples

file <- download_data('atkin.metabolon.xlsx')
object <- read_metabolon(file)
object %<>% fit_limma(block = 'Subject')
object %<>% ftype()
fdt(object)

bhagwataditya/autonomics documentation built on Dec. 1, 2024, 12:27 a.m.