guess_maxquant_quantity: Guess maxquant quantity from snames

In bhagwataditya/autonomics: Unified statistal Modeling of Omics Data

Guess maxquant quantity from snames

Description

Guess maxquant quantity from snames

Usage

guess_maxquant_quantity(x)

Arguments

x	character vector

Value

string: value from names(MAXQUANT_PATTERNS)

Examples

# file
    file <- system.file('extdata/fukuda20.proteingroups.txt', package = 'autonomics')
    guess_maxquant_quantity(file)

# character vector
    x <- "Ratio M/L normalized STD(L)_E00(M)_E01(H)_R1"
    guess_maxquant_quantity(x)

    x <- "Ratio M/L STD(L)_E00(M)_E01(H)_R1"
    guess_maxquant_quantity(x)

    x <- "LFQ intensity E00.R1"
    guess_maxquant_quantity(x)

    x <- "Reporter intensity corrected 0 STD(0)E00(1)E01(2)_R1"
    guess_maxquant_quantity(x)

    x <- "Reporter intensity 0 STD(0)E00(1)E01(2)_R1"
    guess_maxquant_quantity(x)

    x <- "Intensity H STD(L)_E00(M)_E01(H)_R1"
    guess_maxquant_quantity(x)

bhagwataditya/autonomics documentation built on Nov. 1, 2024, 5:47 a.m.