log2proteins: Get/Set log2proteins

In bhagwataditya/autonomics: Unified Statistical Modeling of Omics Data

Get/Set log2proteins

Description

Get/Set log2proteins

Usage

log2proteins(object)

## S4 method for signature 'SummarizedExperiment'
log2proteins(object)

log2proteins(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,matrix'
log2proteins(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,numeric'
log2proteins(object) <- value

Arguments

object	SummarizedExperiment
value	occupancy matrix (features x samples)

Value

occpuancy matrix (get) or updated object (set)

Examples

file <- system.file('extdata/fukuda20.proteingroups.txt', package = 'autonomics')
object <- read_maxquant_proteingroups(file)
log2proteins(object)[1:3, 1:3]

bhagwataditya/autonomics documentation built on Dec. 1, 2024, 12:27 a.m.