plot_contrast_venn: Plot contrast venn

In bhagwataditya/autonomics: Unified Statistical Modeling of Omics Data

Plot contrast venn

Description

Plot contrast venn

Usage

plot_contrast_venn(issig, colors = NULL)

Arguments

issig	matrix(nrow, ncontrast): -1 (down), +1 (up)
colors	NULL or colorvector

Value

nothing returned

Examples

file <- system.file('extdata/atkin.metabolon.xlsx', package = 'autonomics')
object <- read_metabolon(file)
object %<>% fit_wilcoxon(~ subgroup, block = 'Subject')
object %<>% fit_limma(   ~ subgroup, block = 'Subject', codingfun = contr.treatment.explicit)
isfdr <- is_sig(object, contrast = 't3-t0', quantity = 'p', fit = fits(object))
plot_contrast_venn(isfdr)

bhagwataditya/autonomics documentation built on Dec. 1, 2024, 12:27 a.m.