read_fragpipe: Read fragpipe

In bhagwataditya/autonomics: Unified Statistical Modeling of Omics Data

Read fragpipe

Description

Read fragpipe

Usage

read_fragpipe(
  dir = getwd(),
  file = if (is_file(dir)) dir else file.path(dir, "combined_protein.tsv"),
  contaminants = FALSE,
  verbose = TRUE
)

Arguments

dir	directory with 'combined_protein.tsv'
file	'combined_protein.tsv' (full path)
contaminants	whether to include contaminants
verbose	whether to msg

Value

SummarizedExperiment

Examples

file <- download_data('multiorganism.combined_protein.tsv')
object <- read_fragpipe(file = file)
object
fdt(object)
sdt(object)

bhagwataditya/autonomics documentation built on Dec. 1, 2024, 12:27 a.m.