read_salmon: Read salmon
In bhagwataditya/autonomics: Unified Statistical Modeling of Omics Data
read_salmon R Documentation
Read salmon
Description
Read salmon
Usage
read_salmon(dir, sfile = NULL, by = NULL, ensdb = NULL)
Arguments
dir
salmon results rootdir
sfile
samplefile
by
samplefile column to merge by
ensdb
EnsDb object
Value
SummarizedExperiment
Examples
# dir <- '../bh/salmon_quants'
# sfile <- '../bh/samplesheet.csv'
# by <- 'salmonDir'
# ah <- AnnotationHub::AnnotationHub()
# ensdb <- ah[['AH98078']]
# read_salmon(dir, sfile = sfile, by = 'salmonDir', ensdb = ensdb)
bhagwataditya/autonomics documentation built on Dec. 1, 2024, 12:27 a.m.
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| read_salmon | R Documentation |
Read salmon
Description
Read salmon
Usage
read_salmon(dir, sfile = NULL, by = NULL, ensdb = NULL)
Arguments
dir |
salmon results rootdir |
sfile |
samplefile |
by |
samplefile column to merge by |
ensdb |
EnsDb object |
Value
SummarizedExperiment
Examples
# dir <- '../bh/salmon_quants'
# sfile <- '../bh/samplesheet.csv'
# by <- 'salmonDir'
# ah <- AnnotationHub::AnnotationHub()
# ensdb <- ah[['AH98078']]
# read_salmon(dir, sfile = sfile, by = 'salmonDir', ensdb = ensdb)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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