dequantify: Dequantify maxquant snames

In bhagwataditya/importomics: Unified statistal Modeling of Omics Data

Dequantify maxquant snames

Description

Drop quantity ('Reporter intensity').
Encode {channel} as suffix.

Usage

dequantify(x, quantity = guess_maxquant_quantity(x), verbose = FALSE)

Arguments

x	character
quantity	⁠'ratio', 'normalizedratio'⁠, 'LFQ intensity', ⁠'intensity', 'labeledintensity'⁠ ⁠'reporterintensity', 'correctedreporterintensity'⁠
verbose	TRUE or FALSE

Details

⁠ Ratio H/L WT(L).KD(H).R1 -> WT(L).KD(H).R1{H/L}⁠ ⁠ LFQ intensity WT.R1 -> WT.R1⁠ ⁠Reporter intensity 0 WT(126).KD(127).R1 -> WT(1).KD(2).R1{1}⁠

Value

character

Examples

dequantify(c('Ratio H/L WT(L).KD(M).OE(H).R1',             # Ratios
             'Ratio M/L WT(L).KD(M).OE(H).R1'))
dequantify(c('Ratio H/L normalized WT(L).KD(M).OE(H).R1',  # Norm. Ratios
             'Ratio M/L normalized WT(L).KD(M).OE(H).R1'))
dequantify(c('LFQ intensity WT.R1',                        # LFQ intensity
             'LFQ intensity KD.R1'))
dequantify(c('Reporter intensity 1 WT(126).KD(127).R1',    # Rep.intensities
             'Reporter intensity 2 WT(126).KD(127).R1'))

bhagwataditya/importomics documentation built on Oct. 29, 2024, 3:19 p.m.