dot-read_maxquant_proteingroups: Read proteingroups/phosphosites as-is

In bhagwataditya/importomics: Unified statistal Modeling of Omics Data

Read proteingroups/phosphosites as-is

Description

Read proteingroups/phosphosites as-is

Usage

.read_maxquant_proteingroups(
  file,
  quantity = guess_maxquant_quantity(file),
  verbose = TRUE
)

.read_maxquant_phosphosites(
  file,
  profile,
  quantity = guess_maxquant_quantity(file),
  verbose = TRUE
)

Arguments

file	proteingroups / phosphosites file
quantity	string
verbose	TRUE / FALSE
profile	proteingroups file

Value

data.table

Examples

profile <- download_data('billing19.proteingroups.txt')
fosfile <- download_data('billing19.phosphosites.txt')
prodt <- .read_maxquant_proteingroups(file = profile)
fosdt <- .read_maxquant_phosphosites( file = fosfile, profile = profile)

bhagwataditya/importomics documentation built on April 20, 2024, 11:19 p.m.