download_data: Download autonomics example data

In bhagwataditya/importomics: Unified statistal Modeling of Omics Data

Download autonomics example data

Description

Download autonomics example data

Usage

DATADIR

download_data(
  filename = NULL,
  localdir = file.path(DATADIR, split_extract_fixed(filename, ".", 1)),
  verbose = TRUE,
  force = FALSE
)

Arguments

filename	file name 'atkin.somascan.adat' Halama, 2018 effects of hypoglycemia 'atkin.metabolon.xlsx' 'billing16.bam.zip' Billing, 2016 stemcell comparison 'billing16.rnacounts.txt' 'billing16.somascan.adat' 'billing16.proteingroups.txt' 'billing19.rnacounts.txt' Billing, 2016 stemcell differentiation 'billing19.proteingroups.txt' 'billing19.phosphosites.txt' 'ddglucose.proteingroups.txt' Omics Module glycolysis inhibitor 'fukuda20.proteingroups.txt' Fukuda, 2020 zebrafish development 'halama18.metabolon.xlsx' Halama, 2018 glutaminase inhibitor
localdir	local dir to save file to
verbose	TRUE / FALSE
force	TRUE / FALSE

Format

An object of class character of length 1.

Value

local file path

Examples

# Show available datasets
    download_data()
    
# atkin 2018 - hypoglycemia - pubmed 30525282
    download_data('atkin.somascan.adat')            # somascan  intensities
    download_data('atkin.metabolon.xlsx')           # metabolon intensities

# billing16 - stemcell characterization - pubmed 26857143
    download_data('billing16.proteingroups.txt')      # proteingroup ratios
    download_data('billing16.somascan.adat')          # somascan  intensities
    download_data('billing16.rnacounts.txt')          # rnaseq    counts
    download_data('billing16.bam.zip')                # rnaseq    alignments

# billing19 - stemcell differentiation - pubmed 31332097
    # download_data('billing19.proteingroups.txt')    # proteingroup ratios
    # download_data('billing19.phosphosites.txt')     # phosphosite  ratios
    # download_data('billing19.rnacounts.txt')        # rnaseq       counts

# fukuda20 - heart regeneration - pubmed PXD016235
    download_data('fukuda20.proteingroups.txt')       # proteingroup LFQ

# halama18 - glutaminase inhibition - pubmed 30525282
    download_data('halama18.metabolon.xlsx')          # metabolon intensities

bhagwataditya/importomics documentation built on April 20, 2024, 11:19 p.m.