Files in bhattacharya-a-bt/isoTWAS
Isoform-level transcriptome-wide association studies
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/bayes_factor.R
R/burdenTest.R
R/compute_blup.R
R/compute_curds_whey.R
R/compute_finemap_regress.R
R/compute_fixed.R
R/compute_isotwas.R
R/compute_mrce.R
R/compute_omega.R
R/conditional_test.R
R/conditional_test_focus.R
R/convert_model.R
R/curds_whey.R
R/estimate_cor.R
R/finemap_regress.R
R/get_resid.R
R/isotwas-package.R
R/multivariate_elasticnet.R
R/multivariate_joinet.R
R/multivariate_spls.R
R/p_confirm.R
R/p_screen.R
R/rblasso.R
R/twas_finemap.R
R/univariate_blup.R
R/univariate_elasticnet.R
R/univariate_susie.R
R/utils.R
README.md
_pkgdown.yml
doc/motivation.R
doc/motivation.Rmd
doc/motivation.html
doc/pipeline.R
doc/pipeline.Rmd
doc/pipeline.html
doc/stageassoc.R
doc/stageassoc.Rmd
doc/stageassoc.html
docs/404.html
docs/articles/images/motivation-01.png
docs/articles/images/scheme-01.png
docs/articles/index.html
docs/articles/motivation.html
docs/articles/pipeline.html
docs/articles/stageassoc.html
docs/articles/train.html
docs/authors.html
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.2.2/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/index.html
docs/link.svg
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/bayes_factor.html
docs/reference/burdenTest.html
docs/reference/compute_blup.html
docs/reference/compute_curds_whey.html
docs/reference/compute_finemap_regress.html
docs/reference/compute_fixed.html
docs/reference/compute_isotwas.html
docs/reference/compute_mrce.html
docs/reference/compute_omega.html
docs/reference/compute_spring.html
docs/reference/conditional_test.html
docs/reference/conditional_test_focus.html
docs/reference/convert_model.html
docs/reference/curds_whey.html
docs/reference/estimate_cor.html
docs/reference/figures/motivation.png
docs/reference/figures/scheme.png
docs/reference/finemap_regress.html
docs/reference/get_resid.html
docs/reference/index.html
docs/reference/multivariate_elasticnet.html
docs/reference/multivariate_joinet.html
docs/reference/multivariate_mmbr.html
docs/reference/multivariate_mrmash.html
docs/reference/multivariate_spls.html
docs/reference/p_confirm.html
docs/reference/p_screen.html
docs/reference/twas_finemap.html
docs/reference/univariate_blup.html
docs/reference/univariate_elasticnet.html
docs/reference/univariate_susie.html
docs/search.json
docs/sitemap.xml
index.md
inst/extdata/ENSG00000070831_LDMatrix.RDS
inst/extdata/ENSG00000070831_isoTWAS.RDS
inst/extdata/ENSG00000162552_LDMatrix.RDS
inst/extdata/ENSG00000162552_isoTWAS.RDS
inst/extdata/ENSG00000230068_LDMatrix.RDS
inst/extdata/ENSG00000230068_isoTWAS.RDS
inst/extdata/gwas.txt
inst/extdata/isoform_exp.RDS
inst/extdata/ld.bed
inst/extdata/ld.bim
inst/extdata/ld.fam
inst/extdata/model_example.RDS
inst/extdata/model_example.tsv
inst/extdata/test_LD_finemapping.RDS
inst/extdata/train.bed
inst/extdata/train.bim
inst/extdata/train.fam
inst/extdata/tutorial_SCZ_2022.hm3_filter.sumstats.gz
isotwas.Rproj
man/.DS_Store
man/bayes_factor.Rd
man/burdenTest.Rd
man/compute_blup.Rd
man/compute_curds_whey.Rd
man/compute_finemap_regress.Rd
man/compute_fixed.Rd
man/compute_isotwas.Rd
man/compute_mrce.Rd
man/compute_omega.Rd
man/conditional_test.Rd
man/conditional_test_focus.Rd
man/convert_model.Rd
man/curds_whey.Rd
man/estimate_cor.Rd
man/figures/motivation.png
man/figures/scheme.png
man/finemap_regress.Rd
man/get_resid.Rd
man/multivariate_elasticnet.Rd
man/multivariate_joinet.Rd
man/multivariate_spls.Rd
man/p_confirm.Rd
man/p_screen.Rd
man/twas_finemap.Rd
man/univariate_blup.Rd
man/univariate_elasticnet.Rd
man/univariate_susie.Rd
src/isotwas_init.c
src/mrce-solveb.c
vignettes/.gitignore
vignettes/images/motivation-01.png
vignettes/images/motivation.png
vignettes/images/scheme-01.png
vignettes/images/scheme.png
vignettes/motivation.Rmd
vignettes/pipeline.Rmd
vignettes/stageassoc.Rmd
