conditional_test: Conditional gene-level test
In bhattacharya-a-bt/isoTWAS: Isoform-level transcriptome-wide association studies
View source: R/conditional_test.R
conditional_test R Documentation
Conditional gene-level test
Description
The function tests the gene association with trait conditional
on isoforms
Usage
conditional_test(w_gene, w_iso, ld, z, gene_name, tx_name)
Arguments
w_gene
vector, weights for gene
w_iso
matrix, weights for significant isoforms
ld
matrix, LD matrix
z
vector, GWAS Z-scores
gene_name
character, gene name
tx_name
vector, character vector of tx names in order of columns of Y
Value
data frame of conditional Z-scores for all combinations of tx
bhattacharya-a-bt/isoTWAS documentation built on Jan. 9, 2025, 10:25 p.m.
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View source: R/conditional_test.R
| conditional_test | R Documentation |
Conditional gene-level test
Description
The function tests the gene association with trait conditional on isoforms
Usage
conditional_test(w_gene, w_iso, ld, z, gene_name, tx_name)
Arguments
w_gene |
vector, weights for gene |
w_iso |
matrix, weights for significant isoforms |
ld |
matrix, LD matrix |
z |
vector, GWAS Z-scores |
gene_name |
character, gene name |
tx_name |
vector, character vector of tx names in order of columns of Y |
Value
data frame of conditional Z-scores for all combinations of tx
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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