bicbioeng/ctgGEM: Generating Tree Hierarchy Visualizations from Gene Expression Data
Cell Tree Generator for Gene Expression Matrices (ctgGEM) streamlines the building of cell-state hierarchies from single-cell gene expression data across multiple existing tools for improved comparability and reproducibility. It supports pseudotemporal ordering algorithms and visualization tools from monocle, cellTree, TSCAN, sincell, and destiny, and provides a unified output format for integration with downstream data analysis workflows and Cytoscape.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Clustering DataImport DifferentialExpression GeneExpression ImmunoOncology MultipleComparison QualityControl RNASeq Sequencing SingleCell Visualization |
| Maintainer | |
| License | GPL(>=2) |
| Version | 1.5.2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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