Cell Tree Generator for Gene Expression Matrices (ctgGEM) streamlines the building of cell-state hierarchies from single-cell gene expression data across multiple existing tools for improved comparability and reproducibility. It supports pseudotemporal ordering algorithms and visualization tools from monocle, cellTree, TSCAN, sincell, and destiny, and provides a unified output format for integration with downstream data analysis workflows and Cytoscape.
|Bioconductor views||Clustering DataImport DifferentialExpression GeneExpression ImmunoOncology MultipleComparison QualityControl RNASeq Sequencing SingleCell Visualization|
|Package repository||View on GitHub|
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