README.md

In bicbioeng/ctgGEM: Generating Tree Hierarchy Visualizations from Gene Expression Data

ctgGEM (cell tree generator for Gene Expression Matrices)

ctgGEM is an R package that combines a variety of visualization packages for single cell RNA tree hierarchies. This package provides users with a streamlined, simplified way to construct hierarchies from the workflows of these packages using one function call with a single centralized data object and the desired visualization package name as a parameter. Currently supported packages are:

• monocle
• sincell
• TSCAN

Packages formerly a part of ctgGEM (now depracated or removed):

• cellTree
• destiny

For a guide on using the features of ctgGEM and the types of data required for each visualization, please see the package vignette.

Authors: Mark Block, Carrie Minette, Evgeni Radichev Maintainer: USD Biomedical Engineering [e-mail]

bicbioeng/ctgGEM documentation built on Sept. 5, 2021, 8:42 p.m.