makeMonocle: A Cell Tree Generating Function using monocle

Description Usage Arguments Value

View source: R/makeMonocle.R

Description

This function, called by generate_tree, creates a cell tree using the monocle package. This function utilizes code from the monocle vignette R script.

Usage

1
makeMonocle(dataSet, outputDir = NULL)

Arguments

dataSet

a ctgGEMset object

outputDir

the directory where output should be saved, defaults to the temporary location returned by tempdir()

Value

an updated ctgGEMset object


bicbioeng/ctgGEM documentation built on July 19, 2020, 12:42 a.m.