cran-comments.md

In biips/rbiips: Bayesian Inference with Interacting Particle Systems

Test environments

• local: Ubuntu Xenial 16.04 x64, R 3.3.2
• travis-ci: Ubuntu Precise 12.04 64-bit, R 3.3.2
• travis-ci: OS X El Capitan 10.11.6, R 3.3.2
• appveyor: Windows Server 2012 R2 i386, R devel
• appveyor: Windows Server 2012 R2 x64, R devel
• win-builder, R devel (https://win-builder.r-project.org/82i4Nm1tyvts/)

R CMD check results

There was no ERRORs

There was 1 WARNING and 2 NOTEs:

• checking compiled code ... WARNING File ‘rbiips/libs/rbiips.so’: Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++) Object: ‘biips/src/core/graph/Graph.o’ Found ‘exit’, possibly from ‘exit’ (C) Object: ‘biips/src/compiler/compiler/scanner.o’ Found ‘stderr’, possibly from ‘stderr’ (C) Objects: ‘biips/src/compiler/compiler/parser.o’, ‘biips/src/compiler/compiler/scanner.o’ Found ‘stdout’, possibly from ‘stdout’ (C) Object: ‘biips/src/compiler/compiler/scanner.o’

Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor the system RNG.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

These calls come from the external biips library. They should never be actually called. scanner.cc and parser.cc are automatically generated by flex/bison.

• checking installed package size ... NOTE installed size is 76.2Mb sub-directories of 1Mb or more: libs 75.1Mb

The package embeds the complete sources of biips c++ library in src/biips (only 17Mb when compiled with -O3)

• checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.

I use $(wildcard) GNU make extension because the list of source files is too long

Downstream dependencies

There are currently no downstream dependencies for this package.

Resubmission

This is a resubmission. In this version I have:

• added in Description: See https://biips.github.io for more information on Biips.

biips/rbiips documentation built on Nov. 28, 2020, 2:12 p.m.