Files in biips/rbiips
Bayesian Inference with Interacting Particle Systems

.Rbuildignore
.gitignore
.gitmodules
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/biips-object.r R/biips_model.r R/data.r R/extend_bugs.r R/mcmcarray-object.r R/pimh.r R/plot-methods.r R/pmmh.r R/rbiips-package.r R/sensitivity.r R/smc.r R/smcarray-object.r R/utils.r README.md
_pkgdown.yml
appveyor.yml
cran-comments.md data-raw/data.r
data/out_pimh.rda
data/out_pmmh.rda
data/out_smc.rda
docs/LICENSE
docs/articles/index.html
docs/articles/rbiips_demo.html
docs/articles/rbiips_demo_files/figure-html/unnamed-chunk-5-1.png
docs/articles/rbiips_demo_files/figure-html/unnamed-chunk-6-1.png
docs/articles/rbiips_demo_files/figure-html/unnamed-chunk-6-2.png
docs/articles/rbiips_demo_files/figure-html/unnamed-chunk-7-1.png
docs/articles/rbiips_demo_files/figure-html/unnamed-chunk-8-1.png
docs/articles/rbiips_demo_files/figure-html/unnamed-chunk-8-2.png
docs/articles/rbiips_examples.html
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-12-1.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-12-2.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-12-3.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-12-4.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-12-5.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-12-6.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-12-7.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-12-8.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-12-9.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-13-1.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-13-2.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-14-1.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-1.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-10.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-2.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-3.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-4.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-5.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-6.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-7.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-8.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-17-9.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-18-1.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-18-2.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-7-1.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-7-2.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-7-3.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-7-4.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-7-5.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-7-6.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-1.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-10.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-11.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-12.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-2.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-3.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-4.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-5.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-6.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-7.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-8.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-8-9.png
docs/articles/rbiips_examples_files/figure-html/unnamed-chunk-9-1.png
docs/articles/rbiips_quick.html
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-12-1.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-12-2.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-12-3.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-12-4.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-12-5.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-12-6.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-12-7.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-12-8.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-12-9.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-13-1.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-13-2.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-14-1.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-1.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-10.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-2.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-3.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-4.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-5.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-6.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-7.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-8.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-17-9.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-18-1.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-18-2.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-7-1.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-7-2.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-7-3.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-7-4.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-7-5.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-7-6.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-1.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-10.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-11.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-12.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-2.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-3.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-4.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-5.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-6.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-7.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-8.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-8-9.png
docs/articles/rbiips_quick_files/figure-html/unnamed-chunk-9-1.png
docs/articles/rbiips_usage.html
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-12-1.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-12-2.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-12-3.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-12-4.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-12-5.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-12-6.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-12-7.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-12-8.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-12-9.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-13-1.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-13-2.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-14-1.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-1.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-10.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-2.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-3.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-4.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-5.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-6.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-7.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-8.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-17-9.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-18-1.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-18-2.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-7-1.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-7-2.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-7-3.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-7-4.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-7-5.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-7-6.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-1.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-10.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-11.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-12.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-2.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-3.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-4.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-5.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-6.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-7.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-8.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-8-9.png
docs/articles/rbiips_usage_files/figure-html/unnamed-chunk-9-1.png
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/biips-object.html
docs/reference/biips_model.html
docs/reference/biips_pimh_init.html
docs/reference/biips_pmmh_init.html
docs/reference/biips_smc_samples-1.png
docs/reference/biips_smc_samples-11.png
docs/reference/biips_smc_samples.html
docs/reference/biips_smc_sensitivity-1.png
docs/reference/biips_smc_sensitivity-9.png
docs/reference/biips_smc_sensitivity.html
docs/reference/clear_monitors.biips.html
docs/reference/data_preprocess.html
docs/reference/extend-bugs.html
docs/reference/index.html
docs/reference/mcmcarray-object-1.png
docs/reference/mcmcarray-object-10.png
docs/reference/mcmcarray-object-11.png
docs/reference/mcmcarray-object-12.png
docs/reference/mcmcarray-object-13.png
docs/reference/mcmcarray-object-14.png
docs/reference/mcmcarray-object-15.png
docs/reference/mcmcarray-object-16.png
docs/reference/mcmcarray-object-17.png
docs/reference/mcmcarray-object-18.png
docs/reference/mcmcarray-object-19.png
docs/reference/mcmcarray-object-2.png
docs/reference/mcmcarray-object-26.png
docs/reference/mcmcarray-object-27.png
docs/reference/mcmcarray-object-29.png
docs/reference/mcmcarray-object-3.png
docs/reference/mcmcarray-object-31.png
docs/reference/mcmcarray-object-32.png
docs/reference/mcmcarray-object-4.png
docs/reference/mcmcarray-object-40.png
docs/reference/mcmcarray-object-42.png
docs/reference/mcmcarray-object-43.png
docs/reference/mcmcarray-object-5.png
docs/reference/mcmcarray-object-6.png
docs/reference/mcmcarray-object-65.png
docs/reference/mcmcarray-object-67.png
docs/reference/mcmcarray-object-7.png
docs/reference/mcmcarray-object-73.png
docs/reference/mcmcarray-object-74.png
docs/reference/mcmcarray-object-75.png
docs/reference/mcmcarray-object-76.png
docs/reference/mcmcarray-object-78.png
docs/reference/mcmcarray-object-79.png
docs/reference/mcmcarray-object-8.png
docs/reference/mcmcarray-object-80.png
docs/reference/mcmcarray-object-81.png
docs/reference/mcmcarray-object-85.png
docs/reference/mcmcarray-object-87.png
docs/reference/mcmcarray-object-88.png
docs/reference/mcmcarray-object-89.png
docs/reference/mcmcarray-object-9.png
docs/reference/mcmcarray-object-90.png
docs/reference/mcmcarray-object-91.png
docs/reference/mcmcarray-object.html
docs/reference/mklist.html
docs/reference/out_pimh.html
docs/reference/out_pmmh.html
docs/reference/out_smc.html
docs/reference/parse_varname.html
docs/reference/pimh-object-1.png
docs/reference/pimh-object-15.png
docs/reference/pimh-object-18.png
docs/reference/pimh-object-2.png
docs/reference/pimh-object.html
docs/reference/plot-methods-1.png
docs/reference/plot-methods-10.png
docs/reference/plot-methods-11.png
docs/reference/plot-methods-12.png
docs/reference/plot-methods-13.png
docs/reference/plot-methods-14.png
docs/reference/plot-methods-15.png
docs/reference/plot-methods-16.png
docs/reference/plot-methods-17.png
docs/reference/plot-methods-18.png
docs/reference/plot-methods-19.png
docs/reference/plot-methods-2.png
docs/reference/plot-methods-20.png
docs/reference/plot-methods-21.png
docs/reference/plot-methods-23.png
docs/reference/plot-methods-25.png
docs/reference/plot-methods-26.png
docs/reference/plot-methods-27.png
docs/reference/plot-methods-28.png
docs/reference/plot-methods-29.png
docs/reference/plot-methods-3.png
docs/reference/plot-methods-30.png
docs/reference/plot-methods-32.png
docs/reference/plot-methods-33.png
docs/reference/plot-methods-4.png
docs/reference/plot-methods-43.png
docs/reference/plot-methods-45.png
docs/reference/plot-methods-46.png
docs/reference/plot-methods-48.png
docs/reference/plot-methods-49.png
docs/reference/plot-methods-5.png
docs/reference/plot-methods-50.png
docs/reference/plot-methods-6.png
docs/reference/plot-methods-7.png
docs/reference/plot-methods-8.png
docs/reference/plot-methods-9.png
docs/reference/plot-methods.html
docs/reference/pmmh-object-1.png
docs/reference/pmmh-object-15.png
docs/reference/pmmh-object-18.png
docs/reference/pmmh-object-2.png
docs/reference/pmmh-object.html
docs/reference/pmmh_one_update.html
docs/reference/rbiips-package-1.png
docs/reference/rbiips-package-16.png
docs/reference/rbiips-package-17.png
docs/reference/rbiips-package-19.png
docs/reference/rbiips-package-2.png
docs/reference/rbiips-package-20.png
docs/reference/rbiips-package-21.png
docs/reference/rbiips-package-3.png
docs/reference/rbiips-package-30.png
docs/reference/rbiips-package-32.png
docs/reference/rbiips-package-33.png
docs/reference/rbiips-package-35.png
docs/reference/rbiips-package-36.png
docs/reference/rbiips-package-37.png
docs/reference/rbiips-package-39.png
docs/reference/rbiips-package-4.png
docs/reference/rbiips-package-40.png
docs/reference/rbiips-package-5.png
docs/reference/rbiips-package-54.png
docs/reference/rbiips-package-56.png
docs/reference/rbiips-package-57.png
docs/reference/rbiips-package-58.png
docs/reference/rbiips-package-60.png
docs/reference/rbiips-package-61.png
docs/reference/rbiips-package-63.png
docs/reference/rbiips-package-64.png
docs/reference/rbiips-package-65.png
docs/reference/rbiips-package.html
docs/reference/rec.html
docs/reference/smc_forward_algo.biips.html
docs/reference/smcarray-object-1.png
docs/reference/smcarray-object-10.png
docs/reference/smcarray-object-11.png
docs/reference/smcarray-object-12.png
docs/reference/smcarray-object-13.png
docs/reference/smcarray-object-14.png
docs/reference/smcarray-object-15.png
docs/reference/smcarray-object-16.png
docs/reference/smcarray-object-17.png
docs/reference/smcarray-object-18.png
docs/reference/smcarray-object-2.png
docs/reference/smcarray-object-28.png
docs/reference/smcarray-object-29.png
docs/reference/smcarray-object-3.png
docs/reference/smcarray-object-4.png
docs/reference/smcarray-object-41.png
docs/reference/smcarray-object-43.png
docs/reference/smcarray-object-44.png
docs/reference/smcarray-object-5.png
docs/reference/smcarray-object-6.png
docs/reference/smcarray-object-62.png
docs/reference/smcarray-object-64.png
docs/reference/smcarray-object-65.png
docs/reference/smcarray-object-67.png
docs/reference/smcarray-object-69.png
docs/reference/smcarray-object-7.png
docs/reference/smcarray-object-70.png
docs/reference/smcarray-object-72.png
docs/reference/smcarray-object-74.png
docs/reference/smcarray-object-75.png
docs/reference/smcarray-object-77.png
docs/reference/smcarray-object-79.png
docs/reference/smcarray-object-8.png
docs/reference/smcarray-object-80.png
docs/reference/smcarray-object-81.png
docs/reference/smcarray-object-9.png
docs/reference/smcarray-object.html
inst/CITATION
inst/extdata/hmm.bug
inst/extdata/hmm_f.bug
man/biips-object.Rd man/biips_model.Rd man/biips_pimh_init.Rd man/biips_pmmh_init.Rd man/biips_smc_samples.Rd man/biips_smc_sensitivity.Rd man/clear_monitors.biips.Rd man/data_preprocess.Rd man/extend-bugs.Rd man/mcmcarray-object.Rd man/mklist.Rd man/out_pimh.Rd man/out_pmmh.Rd man/out_smc.Rd man/parse_varname.Rd man/pimh-object.Rd man/plot-methods.Rd man/pmmh-object.Rd man/pmmh_one_update.Rd man/rbiips-package.Rd man/rec.Rd man/smc_forward_algo.biips.Rd man/smcarray-object.Rd
matlab2Roxygen.sed
rbiips.Rproj
src/Makevars
src/Makevars.win
src/RDistribution.cpp
src/RDistribution.h
src/RFunction.cpp
src/RFunction.h
src/Rostream.cpp
src/Rostream.h
src/rbiips.cpp
src/rbiips_utils.cpp
src/rbiips_utils.h
src/wtd_stat.cpp
vignettes/rbiips_demo.Rmd vignettes/rbiips_examples.Rmd
biips/rbiips documentation built on Nov. 28, 2020, 2:12 p.m.