API for bingzhang16/WebGestaltR
Gene Set Analysis Toolkit WebGestaltR
| Global functions | |
|---|---|
| .collapseMethodError | Source code |
| .combineG | Source code Source code |
| .dagColorError | Source code |
| .dataTypeError | Source code |
| .enrichMethodError | Source code |
| .enrichmentFunction | Source code |
| .fdrMethodError | Source code |
| .fdrThrError | Source code |
| .getDescription | Source code |
| .getGenes | Source code |
| .getIdType | Source code |
| .getName | Source code |
| .hasError | Source code |
| .hostNameError | Source code |
| .isOutputError | Source code |
| .loadEnrichDatabaseDescriptionFile | Source code |
| .loadGeneSetData | Source code |
| .load_combined_gmt | Source code |
| .load_meta_gmt | Source code |
| .mappingOutputError | Source code |
| .minMaxNumError | Source code |
| .onAttach | Source code |
| .organismError | Source code |
| .outputDirectoryError | Source code |
| .perNumError | Source code |
| .plotData | Source code |
| .processData | Source code |
| .reportNumError | Source code |
| .returnMaxPos | Source code |
| .sigMethodError | Source code |
| .testMatrixFormat | Source code |
| .toList | Source code |
| .topThrError | Source code |
| .uploadGeneExistingOrganism | Source code |
| .uploadGeneOthers | Source code |
| GOSlimSummary | Man page Source code |
| IDMapping | Man page Source code |
| WebGestaltR | Man page Source code |
| WebGestaltR-package | Man page |
| WebGestaltRBatch | Man page Source code |
| WebGestaltRGsea | Source code |
| WebGestaltRMultiOmics | Man page Source code |
| WebGestaltRMultiOmicsGSEA | Man page Source code |
| WebGestaltRMultiOmicsOra | Man page Source code |
| WebGestaltRNta | Source code |
| WebGestaltROra | Source code |
| WebGestaltR_batch | Man page Source code |
| add_prefix | Source code |
| affinityPropagation | Man page Source code |
| cacheUrl | Man page Source code |
| createMetaReport | Man page Source code |
| createMetaSummaryReport | Man page Source code |
| createNtaReport | Man page Source code |
| createReport | Man page Source code |
| descriptionFileError | Source code |
| enrichDatabaseError | Source code |
| enrichResultSection | Man page Source code |
| expandDag | Man page Source code |
| fill_input_data_frame | Man page Source code |
| formatCheck | Man page Source code |
| full_simple_mapping | Source code |
| geneM | Source code |
| getColorPalette | Source code |
| getDagNodes | Source code |
| getGeneTables | Source code |
| getMetaGSEAGeneTables | Source code |
| getPaletteForGsea | Source code |
| getTopGseaResults | Source code |
| getTopMetaGseaResults | Source code |
| get_gmt_file | Source code |
| get_ora_colors | Source code |
| get_white | Source code |
| gmtFormatError | Source code |
| goSlimReport | Source code |
| goSlimSummary | Man page Source code |
| gseaEnrichment | Source code |
| gsea_rust | Man page Source code |
| hmdb_map | Source code |
| idMapping | Man page Source code |
| idMappingError | Source code |
| idMappingGene | Source code |
| idMappingInput | Source code |
| idMappingMetabolites | Source code |
| idMappingOutput | Source code |
| idMappingPhosphosite | Source code |
| idToSymbol | Man page Source code |
| idTypeError | Source code |
| identifyStandardId | Source code |
| interestGeneError | Source code |
| is.wholenumber | Source code |
| jaccardSim | Man page Source code |
| kMedoid | Man page Source code |
| keepRep | Man page Source code |
| keggLinkModification | Source code |
| keggMetaboliteLinkModification | Source code |
| linkModification | Man page Source code |
| listArchiveURL | Man page Source code |
| listArchiveUrl | Man page Source code |
| listGeneSet | Man page Source code |
| listIDType | Man page Source code |
| listIdType | Man page Source code |
| listOrganism | Man page Source code |
| listReferenceSet | Man page Source code |
| loadGeneSet | Man page Source code |
| loadInterestGene | Source code |
| loadReferenceGene | Source code |
| mapUserId | Source code |
| marginalBenefit | Source code |
| marginalGain | Source code |
| mergeDuplicate | Source code |
| metaEnrichResultSection | Man page Source code |
| metaLinkModification | Man page Source code |
| metaSummaryDescription | Man page Source code |
| meta_keggLinkModification | Source code |
| meta_keggMetaboliteLinkModification | Source code |
| meta_wikiLinkModification | Source code |
| meta_wikiMetaboliteLinkModification | Source code |
| multiGseaEnrichment | Source code |
| multiOraEnrichment | Source code |
| multiswGsea | Man page Source code |
| nta_rust | Man page Source code |
| oraEnrichment | Source code |
| ora_rust | Man page Source code |
| parameterErrorMessage | Source code |
| plotEnrichmentPlot | Source code Source code |
| prepareGseaInput | Man page Source code |
| prepareInputMatrixGsea | Man page Source code |
| randomWalkEnrichment | Source code |
| readGMT | Source code |
| readGmt | Man page Source code |
| referenceGeneError | Source code |
| removeFileProtocol | Source code |
| replace_null | Source code |
| replace_prefix | Source code |
| rust_multiomics_ora | Man page Source code |
| sanitizeFileName | Source code |
| shift_colors | Source code |
| simple_mapping | Source code |
| specificParameterSummaryGsea | Man page Source code |
| specificParameterSummaryOra | Man page Source code |
| stardardDiffError | Source code |
| summaryDescription | Man page Source code |
| swGsea | Man page Source code |
| targetIdTypeError | Source code |
| testNull | Source code |
| two2one | Source code |
| urlToFile | Source code |
| webApiError | Source code |
| webRequestError | Source code |
| weightedSetCover | Man page Source code |
| wikiLinkModification | Source code |
| wikiMetaboliteLinkModification | Source code |
