createReport: createReport

In bingzhang16/WebGestaltR: Gene Set Analysis Toolkit WebGestaltR

Description

Generate HTML report for ORA and GSEA

Usage

createReport(
  hostName,
  outputDirectory,
  organism = "hsapiens",
  projectName,
  enrichMethod,
  geneSet,
  geneSetDes,
  geneSetDag,
  geneSetNet,
  interestingGeneMap,
  referenceGeneList,
  enrichedSig,
  geneTables,
  clusters,
  background,
  enrichDatabase = NULL,
  enrichDatabaseFile = NULL,
  enrichDatabaseType = NULL,
  enrichDatabaseDescriptionFile = NULL,
  interestGeneFile = NULL,
  interestGene = NULL,
  interestGeneType = NULL,
  collapseMethod = "mean",
  referenceGeneFile = NULL,
  referenceGene = NULL,
  referenceGeneType = NULL,
  referenceSet = NULL,
  minNum = 10,
  maxNum = 500,
  fdrMethod = "BH",
  sigMethod = "fdr",
  fdrThr = 0.05,
  topThr = 10,
  reportNum = 20,
  perNum = 1000,
  dagColor = "binary"
)

bingzhang16/WebGestaltR documentation built on Dec. 11, 2019, 7:01 a.m.