Generate HTML report for ORA and GSEA
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | createReport(
hostName,
outputDirectory,
organism = "hsapiens",
projectName,
enrichMethod,
geneSet,
geneSetDes,
geneSetDag,
geneSetNet,
interestingGeneMap,
referenceGeneList,
enrichedSig,
geneTables,
clusters,
background,
enrichDatabase = NULL,
enrichDatabaseFile = NULL,
enrichDatabaseType = NULL,
enrichDatabaseDescriptionFile = NULL,
interestGeneFile = NULL,
interestGene = NULL,
interestGeneType = NULL,
collapseMethod = "mean",
referenceGeneFile = NULL,
referenceGene = NULL,
referenceGeneType = NULL,
referenceSet = NULL,
minNum = 10,
maxNum = 500,
fdrMethod = "BH",
sigMethod = "fdr",
fdrThr = 0.05,
topThr = 10,
reportNum = 20,
perNum = 1000,
dagColor = "binary"
)
|
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