createMetaReport: createMetaReport

In bingzhang16/WebGestaltR: Gene Set Analysis Toolkit WebGestaltR

createMetaReport

Description

Generate HTML report for ORA and GSEA MetaAnalysis

Usage

createMetaReport(
  hostName = NULL,
  outputDirectory = NULL,
  organism = "hsapiens",
  projectName = NULL,
  enrichMethod = NULL,
  geneSet_list = NULL,
  geneSetDes_list = NULL,
  geneSetDag_list = NULL,
  geneSetNet_list = NULL,
  interestingGeneMap_list = NULL,
  referenceGeneList_list = NULL,
  enrichedSig_list = NULL,
  geneTables_list = NULL,
  clusters_list = NULL,
  background_list,
  enrichDatabase_list = NULL,
  enrichDatabaseFile_list = NULL,
  enrichDatabaseType_list = NULL,
  enrichDatabaseDescriptionFile_list = NULL,
  interestGeneFile_list = NULL,
  interestGene_list = NULL,
  interestGeneType_list = NULL,
  collapseMethod = "mean",
  referenceGeneFile_list = NULL,
  referenceGene_list = NULL,
  referenceGeneType_list = NULL,
  referenceSet_list = NULL,
  minNum = 10,
  maxNum = 500,
  fdrMethod = "BH",
  sigMethod = "fdr",
  fdrThr = 0.05,
  topThr = 10,
  reportNum = 20,
  perNum = 1000,
  p = 1,
  dagColor = "binary",
  listNames = NULL
)

bingzhang16/WebGestaltR documentation built on April 25, 2024, 2:12 a.m.