plot_enrichment: Plot output of gene set Enrichment Analysis

In bioFAM/MOFA2: Multi-Omics Factor Analysis v2

Plot output of gene set Enrichment Analysis

Description

Method to plot the results of the gene set Enrichment Analyisis

Usage

plot_enrichment(
  enrichment.results,
  factor,
  alpha = 0.1,
  max.pathways = 25,
  text_size = 1,
  dot_size = 5
)

Arguments

enrichment.results	output of run_enrichment function
factor	a string with the factor name or an integer with the factor index
alpha	p.value threshold to filter out gene sets
max.pathways	maximum number of enriched pathways to display
text_size	text size
dot_size	dot size

Details

it requires run_enrichment to be run beforehand.

Value

a ggplot2 object

bioFAM/MOFA2 documentation built on June 12, 2024, 3:57 p.m.