plot_enrichment_heatmap: Heatmap of Feature Set Enrichment Analysis results

In bioFAM/MOFA2: Multi-Omics Factor Analysis v2

Heatmap of Feature Set Enrichment Analysis results

Description

This method generates a heatmap with the adjusted p.values that result from the the feature set enrichment analysis. Rows are feature sets and columns are factors.

Usage

plot_enrichment_heatmap(
  enrichment.results,
  alpha = 0.1,
  cap = 1e-50,
  log_scale = TRUE,
  ...
)

Arguments

enrichment.results	output of run_enrichment function
alpha	FDR threshold to filter out unsignificant feature sets which are not represented in the heatmap. Default is 0.10.
cap	cap p-values below this threshold
log_scale	logical indicating whether to plot the -log of the p.values.
...	extra arguments to be passed to the pheatmap function

Value

produces a heatmap

bioFAM/MOFA2 documentation built on Feb. 1, 2024, 6:41 a.m.