plot_sharedness: Barplot showing the sharedness per factor
In bioFAM/MOFA2: Multi-Omics Factor Analysis v2
plot_sharedness R Documentation
Barplot showing the sharedness per factor
Description
Barplot indicating a sharedness score (between 0 (non-shared) and 1 (shared)) per factor
Usage
plot_sharedness(object, factors = "all", color = "#B8CF87")
Arguments
object
a trained MOFA object using MEFISTO.
factors
character vector with the factors names, or numeric vector indicating the indices of the factors to use
color
for the shared part of the bar
Details
The sharedness score is calculated as the distance of the learnt group correlation matrix to the identity matrix
in terms of the mean absolute distance on the off-diagonal elements.
Value
Returns a ggplot2 object
bioFAM/MOFA2 documentation built on Feb. 1, 2024, 6:41 a.m.
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| plot_sharedness | R Documentation |
Barplot showing the sharedness per factor
Description
Barplot indicating a sharedness score (between 0 (non-shared) and 1 (shared)) per factor
Usage
plot_sharedness(object, factors = "all", color = "#B8CF87")
Arguments
object |
a trained |
factors |
character vector with the factors names, or numeric vector indicating the indices of the factors to use |
color |
for the shared part of the bar |
Details
The sharedness score is calculated as the distance of the learnt group correlation matrix to the identity matrix in terms of the mean absolute distance on the off-diagonal elements.
Value
Returns a ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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