plot_smoothness: Barplot showing the smoothness per factor

In bioFAM/MOFA2: Multi-Omics Factor Analysis v2

Barplot showing the smoothness per factor

Description

Barplot indicating a smoothness score (between 0 (non-smooth) and 1 (smooth)) per factor

Usage

plot_smoothness(object, factors = "all", color = "cadetblue")

Arguments

object	a trained MOFA object using MEFISTO.
factors	character vector with the factors names, or numeric vector indicating the indices of the factors to use
color	for the smooth part of the bar

Details

The smoothness score is given by the scale parameter for the underlying Gaussian process of each factor.

Value

Returns a ggplot2 object

Examples

# Using an existing trained model
file <- system.file("extdata", "MEFISTO_model.hdf5", package = "MOFA2")
model <- load_model(file)
smoothness_bars <- plot_smoothness(model)

bioFAM/MOFA2 documentation built on June 12, 2024, 3:57 p.m.