om_goseq: goseq analysis
In bioShaun/omplotr: store plot functions & themes for onmath projects

om_goseq

R Documentation

goseq analysis

Description

goseq analysis

Usage

om_goseq(diff_genes, gene_length_df, gene_go_map, out_prefix = NULL)

Arguments

`diff_genes`	diff gene vector
`gene_length_df`	gene length dataframe
`gene_go_map`	gene go map file
`out_prefix`	out putfile prefix, default is NULL, don't output file

Examples

diff_genes <- go_test_data_list[['test_diff_genes']]
gene_length_df <- go_test_data_list[['test_gene_len']]
gene_go_map <- system.file("extdata", "topgo_test_data.txt", package = "omplotr")
goseq_output <- om_goseq(diff_genes, gene_length_df, gene_go_map)
head(goseq_output, 4)

bioShaun/omplotr documentation built on June 11, 2025, 7:48 a.m.