om_topgo: topGO plot
In bioShaun/omplotr: store plot functions & themes for onmath projects

om_topgo

R Documentation

topGO plot

Description

topGO plot

Usage

om_topgo(gene_go_map, diff_genes, enrich_result_df, name = NULL,
  out_dir = NULL)

Arguments

`gene_go_map`	gene go map file
`diff_genes`	diff gene vector
`enrich_result_df`	goseq analysis result
`name`	out put file name, default is NULL, don't output file
`out_dir`	out put directory, default is NULL, don't output file

Examples

gene_go_map <- system.file("extdata", "topgo_test_data.txt", package = "omplotr")
diff_genes <- go_test_data_list[['test_diff_genes']]
gene_length_df <- go_test_data_list[['test_gene_len']]
enrich_result_df <- om_goseq(diff_genes, gene_length_df, gene_go_map)
om_topgo(gene_go_map, diff_genes, enrich_result_df)

bioShaun/omplotr documentation built on June 11, 2025, 7:48 a.m.