om_volcano_plot: plot diff expression volcano plot
In bioShaun/omplotr: store plot functions & themes for onmath projects
om_volcano_plot R Documentation
plot diff expression volcano plot
Description
plot diff expression volcano plot
Usage
om_volcano_plot(dpa_results, compare_name, logfc = 1, qvalue = 0.05,
outdir = NULL)
Arguments
dpa_results
diff analysis results
compare_name
compare name of diff analysis, 'ALL' for merged results
logfc
log2foldchange cutoff for DEG analysis, default is 1
qvalue
adjust pvalue cutoff for DEG analysis, default is 0.05
outdir
out put directory, default is NULL, don't output file
Examples
om_volcano_plot(diff_test_data, 'Case_vs_Control')
om_volcano_plot(diff_test_data, 'ALL')
bioShaun/omplotr documentation built on June 11, 2025, 7:48 a.m.
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| om_volcano_plot | R Documentation |
plot diff expression volcano plot
Description
plot diff expression volcano plot
Usage
om_volcano_plot(dpa_results, compare_name, logfc = 1, qvalue = 0.05,
outdir = NULL)
Arguments
dpa_results |
diff analysis results |
compare_name |
compare name of diff analysis, 'ALL' for merged results |
logfc |
log2foldchange cutoff for DEG analysis, default is 1 |
qvalue |
adjust pvalue cutoff for DEG analysis, default is 0.05 |
outdir |
out put directory, default is NULL, don't output file |
Examples
om_volcano_plot(diff_test_data, 'Case_vs_Control')
om_volcano_plot(diff_test_data, 'ALL')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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