API for biobakery/anpan
Quantifying Microbial Strain-Host Associations
| Global functions | |
|---|---|
| .onAttach | Source code |
| anpan | Man page |
| anpan_batch | Man page |
| anpan_pglmm | Man page Source code |
| anpan_pglmm_batch | Man page |
| anpan_pwy_ranef | Man page Source code |
| anpan_pwy_ranef_batch | Man page Source code |
| anpan_repeated_measures | Man page |
| anpan_subjectwise_pglmm | Man page |
| anpan_vignette | Man page Source code |
| blank_tree | Source code |
| compute_clade_effects | Man page Source code |
| ctl_case_trees | Source code |
| delete_leaf | Source code |
| delete_leaves | Source code |
| filter_batch | Man page |
| filter_gf | Man page |
| fit_glms | Source code |
| get_bug_name | Source code |
| get_cor_mat | Man page Source code |
| get_cov_color_map | Source code |
| get_genome_intersect_counts | Man page Source code |
| get_int_plot_df | Source code |
| get_ll_mat | Source code |
| get_ordered_tips | Source code |
| get_pglmm_loo | Source code |
| get_samp_stats_large | Source code |
| inv_logit | Source code |
| log_lik_i_j_gaussian | Source code |
| log_lik_i_j_logistic | Source code |
| log_lik_terms_i | Source code |
| olap_cor_mat_and_meta | Source code |
| olap_tree_and_meta | Man page Source code |
| pca | Source code |
| plot_color_bars | Source code |
| plot_cor_mat | Man page |
| plot_elpd_diff | Man page |
| plot_genome_intersection_histograms | Man page Source code |
| plot_genome_intersections | Man page Source code |
| plot_half_cor_mat | Man page |
| plot_kmeans_dots | Source code |
| plot_lines | Man page Source code |
| plot_outcome_tree | Man page |
| plot_p_value_histogram | Man page |
| plot_pwy_ranef | Man page Source code |
| plot_pwy_ranef_intervals | Man page Source code |
| plot_results | Man page Source code |
| plot_tree_with_post | Man page |
| plot_tree_with_post_pred | Man page |
| precompute_arrays | Source code |
| read_and_filter | Man page |
| read_bug | Man page Source code |
| read_meta | Source code |
| s22_inv | Source code |
| vec_integrand | Source code |
| vec_integrand_logistic | Source code |
| woodbury_s22_inv | Source code |
