condenseRE: Condense a RaggedExperiment to a list of...
In biobenkj/compartmap: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq
condenseRE R Documentation
Condense a RaggedExperiment to a list of SummarizedExperiments
Description
Condense a RaggedExperiment to a list of SummarizedExperiments
Usage
condenseRE(obj)
Arguments
obj
Input RaggedExperiment
Value
A list of SummarizedExperiments corresponding to the assays in the input
Examples
grl <- GRangesList(GRanges(c("A:1-5", "A:4-6", "A:10-15"), score=1:3),
GRanges(c("A:1-5", "B:1-3"), score=4:5))
names(grl) <- c("A", "B")
x <- RaggedExperiment(grl)
x.condense <- condenseRE(x)
biobenkj/compartmap documentation built on Oct. 18, 2023, 11:11 a.m.
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| condenseRE | R Documentation |
Condense a RaggedExperiment to a list of SummarizedExperiments
Description
Condense a RaggedExperiment to a list of SummarizedExperiments
Usage
condenseRE(obj)
Arguments
obj |
Input RaggedExperiment |
Value
A list of SummarizedExperiments corresponding to the assays in the input
Examples
grl <- GRangesList(GRanges(c("A:1-5", "A:4-6", "A:10-15"), score=1:3),
GRanges(c("A:1-5", "B:1-3"), score=4:5))
names(grl) <- c("A", "B")
x <- RaggedExperiment(grl)
x.condense <- condenseRE(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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