getSeqLengths: Get the seqlengths of a chromosome from a given genome's...

In biobenkj/compartmap: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq

Get the seqlengths of a chromosome from a given genome's GRanges

Description

The goal for this function is to eliminate the need to lug around large packages when we only want seqlengths for things.

Usage

getSeqLengths(genome.gr, chr = "chr14")

Arguments

genome.gr	A GRanges object of the genome (from getGenome())
chr	What chromosome to extract the seqlengths of

Value

The seqlengths of a specific chromosome

Examples

hg19.chr14.seqlengths <- getSeqLengths(getGenome('hg19'), chr = "chr14")

biobenkj/compartmap documentation built on April 5, 2025, 9:17 a.m.