getSeqLengths: Get the seqlengths of a chromosome

In biobenkj/compartmap: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq

Get the seqlengths of a chromosome

Description

The goal for this function is to eliminate the need to lug around large packages when we only want seqlengths for things.

Usage

getSeqLengths(genome = c("hg19", "hg38", "mm9", "mm10"), chr = "chr14")

Arguments

genome	The desired genome to use ("hg19", "hg38", "mm9", "mm10")
chr	What chromosome to extract the seqlengths of

Value

The seqlengths of a specific chromosome

Examples

hg19.chr14.seqlengths <- getSeqLengths(genome = "hg19", chr = "chr14")

biobenkj/compartmap documentation built on Feb. 21, 2025, 9:14 p.m.