artmsFilterEvidenceContaminants: Remove contaminants and empty proteins from the MaxQuant...

View source: R/MSstats_functions.R

artmsFilterEvidenceContaminantsR Documentation

Remove contaminants and empty proteins from the MaxQuant evidence file

Description

Remove contaminants and erronously identified 'reverse' sequences by MaxQuant, in addition to empty protein ids

Usage

artmsFilterEvidenceContaminants(x, verbose = TRUE)

Arguments

x

(data.frame) of the Evidence file

verbose

(logical) TRUE (default) shows function messages

Value

(data.frame) without REV__ and CON__ Protein ids

Examples

ef <- artmsFilterEvidenceContaminants(x = artms_data_ph_evidence)

biodavidjm/artMS documentation built on July 7, 2023, 12:24 p.m.