artms_data_ph_keys: Keys File Example

In biodavidjm/artMS: Analytical R tools for Mass Spectrometry

Keys File Example

Description

the artMS keys file provides the details of the experimental design for any given proteomics experiment.

This particular example belongs to a PH experiment consisting of two head and neck cancer cell lines ("Conditions" "Cal33" and "HSC6"), with 2 biological replicates each (in this reduced version)

Usage

artms_data_ph_keys

Format

Tab delimited file with the following columns:

Raw.file

Raw file processed. Each one should be a unique biological (or technical) replicate

IsotopeLabelType

Type of labeling. L is used for label free experiments

Condition

Label for conditions. VERY IMPORTANT: Only alpha-numeric characters and ⁠underscore (_)⁠ are allowed

BioReplicate

Label for the Biological replicates. VERY IMPORTANT: Use the same labeling for bioreplicate as the Condition, but adding a ⁠dash (-)⁠ corresponding to the number of biological replicate. For example, for Condition "Cal", use Cal-1, Cal-2, Cal-3, etc for the bioreplicates

Run

The MS run number

biodavidjm/artMS documentation built on July 7, 2023, 12:24 p.m.