Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/qualityControl.R
Quality Control for highthroughput 'C' experiment
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x 
object that inherits from class

cis.trans.ratio 
logical; barplot of percentage of interintrachromsomal interactions 
hist.interac 
logical; histogram of the interaction frequency 
scat.interac.dist 
logical; scatter plot of interaction count versus the genomic distance between two elements 
hist.dist 
logical; histogram of the distance between the 'x' and 'y' intervals 
trim.range 
remove the extreme values by trimming the counts. Only use for plotting functions. [0,1] 
winsize 
used for the scat.interac.dist. If specify, the data are windowed before plotting 
dev.new 
if true, each graphs is plotted in a new device 
If x
is a HTClist
object, all HTCexp
objects are merged.
The zero values are not used to compute the descriptive statistics and to display the data.
If trim.range
are lower than 1. The highest values (quantile probability is equal to trim.range
) are discarded.
Create quality plots and return a matrix
with some simple statistics on all, cis and trans data.
N. Servant, B. Lajoie
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