directionalityIndex: Directionality index calculation

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/tads.R

Description

Calculate the directionality index as proposed by Dixon et al. 2012

Usage

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directionalityIndex(x, winup = 2e+06, windown = 2e+06)

Arguments

x

HTClist object

winup

size of upstream window

windown

size of downstrean window

Details

Calculate the directionality index as proposed by Dixon et al. This index is then used to call topological domains in Hi-C/5C data.

Value

A numeric vector

Author(s)

N. Servant

See Also

HTClist-class

Examples

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require(HiCDataHumanIMR90)
data(Dixon2012_IMR90)
hox <- extractRegion(hic_imr90_40$chr6chr6, chr="chr6", from=50e6, to=58e6)
di<-directionalityIndex(hox)

bioinfo-pf-curie/HiTC documentation built on May 17, 2019, 6:39 p.m.