export.my5C: Export 'HTCexp' object to my5C website format

In bioinfo-pf-curie/HiTC: High Throughput Chromosome Conformation Capture analysis

Description

Export HTCexp object to my5C website format

Usage

export.my5C(x, file, genome="mm9", per.chromosome=FALSE)

Arguments

x	object that inherits from class HTCexp
file	character; the prefix of the output file
genome	The genome version. This information is only used for the 'mat' export format. See details
per.chromosome	logical; export each contact maps in a different file (i.e one per chromosome pair)

Details

A tab-delimited matrix file is generated with the row and colnames defined as follow as in the my5C web tool :
REV_2|mm9|chrX:98831149-98834145

Author(s)

N. Servant

See Also

exportC

Examples

## Not run: 
data(Nora_5C)

## Data binning
E14.bin<-binningC(E14$chrXchrX)

## Export the new intervals definition
export.my5C(E14.bin, file="E14my5C")

## End(Not run)

bioinfo-pf-curie/HiTC documentation built on May 17, 2019, 6:39 p.m.