Nora_5C: HiTC - 5C data

In bioinfo-pf-curie/HiTC: High Throughput Chromosome Conformation Capture analysis

Description

5C data described by Nora et al. (2012)

Usage

data(Nora_5C)

Format

Contains two HTClist objects (E14 and MEF). Each of them containing the ChrX intrachromosomal maps as a HTCexp object.

Details

This 5C dataset published by Nora et al (GSE35721), contains two different samples, a male undifferentiated ES cells (E14, GSM873935) and a mouse embryonic fibroblasts (MEF, GSM873924). This dataset is mainly used to describe the available functionalities of the HiTC package. The data provided with the package are count data.

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35721

References

Nora EP, Lajoie BR, Schulz EG, Giorgetti L et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 2012 Apr 11;485(7398):381-5. PMID: 22495304

Examples

data(Nora_5C)
show(E14)
show(MEF)

bioinfo-pf-curie/HiTC documentation built on May 17, 2019, 6:39 p.m.