inst/Tests/run_dev_DEAModule.R

In bioinfo-pf-curie/bioshiny-modules-library: This library aims to provide R shiny apps developers of the Institut Curie with different modules witch can be used as bricks to build bigger shiny app

.rs.api.documentSaveAll() # close and save all open file
suppressWarnings(lapply(paste('package:', names(sessionInfo()$otherPkgs), sep = ""), detach, character.only = TRUE, unload = TRUE))
rm(list = ls(all.names = TRUE))
devtools::document('.')
devtools::load_all('.')
options(app.prod = FALSE) # TRUE = production mode, FALSE = development mode
library(shiny)
import::from(shinydashboard,box, dashboardPage,dashboardSidebar,dashboardBody,dashboardHeader)


if (interactive()){

  ui <- dashboardPage(
    dashboardHeader(title = "Creates model Test"),
    dashboardSidebar(),
    dashboardBody(
      fluidRow(CreateModelUI("Design"),
      fluidRow(box(title = "Contrasts matrix :",width =12,
                   DT::dataTableOutput("contrast"),
                    DT::dataTableOutput("design"))),
      DEAUI(id = "DEA"))#,
     #textOutput("dds")
      # fluidRow(box(title = "Contrasts matrix :",width =12,
      #              DT::dataTableOutput("contrast")))
    )
  )

  server <- function(input, output, session) {

    metadata_path <- system.file("extdata", "metadata.csv", package = "BioshinyModules")
    counts_path <- system.file("extdata", "rawcounts.csv", package = "BioshinyModules")



    metadata <- reactiveValues(table = read.table(metadata_path, header = TRUE, sep = ",",
                                                  row.names = 1)
    )
    counts <- reactiveValues(table = read.table(counts_path, header = TRUE, sep = ",",
                                                row.names = 1)
    )

    Model <- reactiveValues(contrast = NULL, design = NULL)
    observe({
    Model <- callModule(CreateModelServer, "Design",
                        sampleplan = metadata,
                        matrix = counts,
                        var = colnames(metadata$table))

    # DEA <- callModule(DEAServer, "DEA", session = session,
    #                   countmatrix = counts,
    #                   Model = Model)


   })


    output$contrast <- DT::renderDataTable(

      as.data.frame(Model$contrast)
    )

    output$design <- DT::renderDataTable(

      as.data.frame(Model$design)
    )

DEA <- reactiveValues(res= NULL, upp = NULL, down = NULL)
ModelDEA <- reactiveValues(design = NULL, contrast = NULL)

observe({
  ModelDEA$design <- Model$design
  ModelDEA$contrast <- Model$contrast
  DEA <- callModule(DEAServer, "DEA", session = session,
                       countmatrix = counts,
                       Model = ModelDEA)
})
    #observeEvent(DEA$res,{
#DEA <- "a"
observe({
    #if(DEA != "a"){
    print("DEA$res")
    print(DEA$res)
#}
})

    #output$dds <- renderText(renderPrint(print(dds$mydds)))


  }
  shinyApp(ui, server)
}