Files in bioinfoDZ/RISC
Robust Integration of Single-Cell RNA-Seq Datasets
.gitignore
DESCRIPTION
GSE123813/GSE123813_Vignette.pdf
GSE123813/Raw_Data/bcc_annotation.tsv
GSE123813_Vignette_RISC_v1.0.pdf
GSE123813_Vignette_RISC_v1.6.pdf
LICENSE
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/Cluster.R
R/ClusterMarker.R
R/Graph.R
R/Integrating.R
R/Preprocess.R
R/RcppExports.R
R/Reduce_Dimension.R
R/Utilities.R
README.md
RISC_1.0.tar.gz
RISC_1.6.0.tar.gz
RISC_1.7.tar.gz
RISC_Supplementary/GSE110823/GSE110823.R
RISC_Supplementary/GSE110823/GSE110823_ann.tsv
RISC_Supplementary/GSE110823/var.tsv
RISC_Supplementary/GSE111113/GSE111113.R
RISC_Supplementary/GSE111113/var.tsv
RISC_Supplementary/GSE114727/GSE114727.R
RISC_Supplementary/GSE114727/GSE114727_Anno_All.tsv
RISC_Supplementary/GSE114727/var_all.tsv
RISC_Supplementary/GSE114727/var_pos.tsv
RISC_Supplementary/GSE123813/GSE123813_Vignette.Rmd
RISC_Supplementary/GSE123813/bcc_annotation.tsv
RISC_Supplementary/GSE125688/GSE125688.R
RISC_Supplementary/GSE125688/GSE125688_Ann.tsv
RISC_Supplementary/GSE131181/GSE131181.R
RISC_Supplementary/GSE131181/GSE131181_Ann.tsv
RISC_Supplementary/GSE131181/GSE131181_var.tsv
RISC_Supplementary/GSE132044/GSE132044.R
RISC_Supplementary/GSE132044/GSE132044_Anno.tsv
RISC_Supplementary/GSE132044/var.tsv
RISC_Supplementary/GSE84133/GSE84133.R
RISC_Supplementary/GSE84133/GSE84133_Anno.tsv
RISC_Supplementary/GSE84133/GSE84133_Filter.tsv
RISC_Supplementary/GSE84133/var.tsv
RISC_Supplementary/GSE85241_GSE81076_GSE83139_EMTAB_5061/GSE85241_GSE81076_GSE83139_EMTAB_5061.R
RISC_Supplementary/GSE85241_GSE81076_GSE83139_EMTAB_5061/Pancreas_Annotation.tsv
RISC_Supplementary/GSE85241_GSE81076_GSE83139_EMTAB_5061/var.tsv
RISC_Supplementary/GSE96583/Anno0.tsv
RISC_Supplementary/GSE96583/GSE96583.R
RISC_Supplementary/GSE96583/Var0.tsv
RISC_Supplementary/GSE96583/Var0_Ori.tsv
Release.txt
Seurat_to_RISC_RISC_v1.0.pdf
build/vignette.rds
data/datalist
data/raw.mat.rda
inst/doc/RISC_Vignette.R
inst/doc/RISC_Vignette.Rmd
inst/doc/RISC_Vignette.html
man/AddFactor.Rd
man/All-Cluster-Marker.Rd
man/Cluster-Marker.Rd
man/Cluster.Rd
man/DimPlot.Rd
man/Disperse.Rd
man/Filter.Rd
man/FilterPlot.Rd
man/Heatmap.Rd
man/Import-10X-h5.Rd
man/Import-10X-mtx.Rd
man/Import-Matrix.Rd
man/InPlot.Rd
man/Integration-Algorithm-SIMPLS.Rd
man/MSC.Rd
man/Multiple-Integrating.Rd
man/Normalize.Rd
man/PCA.Rd
man/PCPlot.Rd
man/PLS-Integrating.Rd
man/Pairwise-DEGs.Rd
man/Scale.Rd
man/SingleCellData.Rd
man/Subset.Rd
man/UMAP.Rd
man/UMAPlot.Rd
man/Violin-Plot.Rd
man/raw.mat.Rd
man/setClass.Rd
man/setMethod.Rd
man/tSNE.Rd
src/Makevars
src/Makevars.win
src/RcppArmadilloProcess.cpp
src/RcppExports.cpp
tests/testthat.R
tests/testthat/test-workflow.R
vignettes/RISC_Vignette.Rmd
