Import-10X-h5: Import data from 10X Genomics output (h5).

In bioinfoDZ/RISC: Robust Integration of Single-Cell RNA-Seq Datasets

Import data from 10X Genomics output (h5).

Description

Import data directly from 10X Genomics output, usually using filtered gene matrices which contains h5 file. The user only need to input the directory into "data.path". If not the original 10X Genomics output, the user can use 'readsc' function.

Usage

read10X_h5(file.path, is.filter = TRUE)

Arguments

file.path	The path of the filtered 10X Genomics output (h5 file).
is.filter	Remove not expressed genes.

Value

RISC single cell dataset, including count, coldata, and rowdata.

bioinfoDZ/RISC documentation built on March 30, 2024, 9:19 p.m.