SingleCellData: Import single cell data

In bioinfoDZ/RISC: Robust Integration of Single-Cell RNA-Seq Datasets

Import single cell data

Description

The single cell RNA-seq (scRNA-seq) data can be imported in three different ways. Primarily, we could import from 10X Genomics output directly by using "read10Xgenomics". The user only need to provide the folder path. Secondly, we could read data from HT-seq output by "readHTSeqdata", the user have to input the folder path. Lastly, we could input matrix, cell and genes mannually using "readscdata".

Usage

SingleCellData(assay, coldata, rowdata)

Arguments

assay	The list of gene counts.
coldata	The data.frame with cell information.
rowdata	The data.frame with gene information.

Value

SingleCellData

bioinfoDZ/RISC documentation built on March 30, 2024, 9:19 p.m.