FilterPlot: Processing Plot

In bioinfoDZ/RISC: Robust Integration of Single-Cell RNA-Seq Datasets

Processing Plot

Description

The "FilterPlot" function makes the plots to show the UMIs and expressed genes of individual cells. These plots are usually used to estimate the data before and after pre-processing, so the users can visually select the optimal parameters to filter data.

Usage

FilterPlot(object, colFactor = NULL)

Arguments

object	RISC object: a framework dataset.
colFactor	Use the factor (column name) in the coldata to make a processing plot, but each time only one column name can be inputted.

References

Wickham, H. (2016)

Auguie, B. (2015)

Liu et al., Nature Biotech. (2021)

Examples

# RISC object
obj0 = raw.mat[[3]]
FilterPlot(obj0, colFactor = 'Group')

bioinfoDZ/RISC documentation built on March 30, 2024, 9:19 p.m.