setClass: RISC data
In bioinfoDZ/RISC: Robust Integration of Single-Cell RNA-Seq Datasets

RISCdata-class

R Documentation

RISC data

Description

The RISC object contains all the basic information used in single cell RNA-seq analysis, including raw counts/UMIs, normalized gene values, dimension reduction, cell clustering, and so on. The framework of RISC object is a S4 dataset, consisting of assay, coldata, rowdata, metadata, vargene, cluster, and DimReduction.

Value

RISC object: a S4 framework dataset

Slots

assay: The list of gene counts/UMIs: raw and normalized counts
coldata: The data.frame with cell information, such as cell types, stages, and other factors.
rowdata: The data.frame with gene information, such as coding or non-coding genes.
metadata: The data.frame with meta value.
vargene: The highly variable gene. These genes are utilized in dimension reduction.
cluster: The cell clustering information: include three algorithms for clustering.
DimReduction: The values of dimension reduction.