Man pages for bioinfoDZ/RISC
Robust Integration of Single-Cell RNA-Seq Datasets
| AddFactor | Utilities Add Factors |
| All-Cluster-Marker | Find All Cluster Markers |
| Cluster | Clustering cells |
| Cluster-Marker | Find Cluster Markers |
| DimPlot | Dimension Reduction Plots |
| Disperse | Processing Data. |
| Filter | The Pre-processing Data. |
| FilterPlot | Processing Plot |
| Heatmap | Heatmap |
| Import-10X-h5 | Import data from 10X Genomics output (h5). |
| Import-10X-mtx | Import data from 10X Genomics output (tsv-mtx). |
| Import-Matrix | Import data from matrix, cell and genes directly. |
| InPlot | Integration Plot |
| Integration-Algorithm-SIMPLS | Integration Algorithm SIMPLS |
| MSC | Alignment of gene expression values |
| Multiple-Integrating | Integrating Multiple Datasets |
| Normalize | The Processing Data. |
| Pairwise-DEGs | Find Differentially Expressed Genes between Clusters |
| PCA | Dimension Reduction. |
| PCPlot | Processing Plot |
| PLS-Integrating | Integrating Multiple Large Datasets |
| raw.mat | Example data |
| Scale | Processing Data. |
| setClass | RISC data |
| setMethod | RISC data |
| SingleCellData | Import single cell data |
| Subset | Utilities Subset data |
| tSNE | Dimension Reduction. |
| UMAP | Dimension Reduction. |
| UMAPlot | UMAP Plots |
| Violin-Plot | Violin Plot |
