fn_get_semi_random_OE: Function to calculate semi random enrichment scores of...

View source: R/fn_spongeffects_utility.R

fn_get_semi_random_OER Documentation

Function to calculate semi random enrichment scores of modules OE (functions taken from: Jerby-Arnon et al. 2018)

Description

Function to calculate semi random enrichment scores of modules OE (functions taken from: Jerby-Arnon et al. 2018)

Usage

fn_get_semi_random_OE(r, genes.dist.q, b.sign, num.rounds = 1000)

Arguments

r

expression matrix

genes.dist.q

values of the genes after binning (result of binning)

b.sign

does the signature contain less than 2 genes? (controll parameter) (is set by mother function (OE module function))

num.rounds

number of rounds (default: 1000)

Value

random signature scores


biomedbigdata/SPONGE documentation built on Feb. 6, 2023, 10:19 p.m.